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COMPREHENSIVE TUMOUR

 

TEST CODE: 008855

DIAGNOSTIC TEST FOR: COMPREHENSIVE TUMOUR ANALYSIS

TURNAROUND TIME: 10–21 calendar days (14 days on average)

PREFERRED SPECIMEN: 3mL whole blood in a purple-top tube

ALTERNATE SPECIMENS: DNA or saliva/assisted saliva

 

Comprehensive  Tumour Analysis

The Genomed  Comprehensive Tumour Analysis is a pan-cancer, targeted, next-generation sequencing (NGS) assay that enables the detection of relevant single nucleotide variants (SNVs) and copy number variations (CNVs) across 500 oncogenes, including driver genes and tumour suppressor genes.

Each report is personalised based on the molecular profile of your tumour. The purpose of the report is to provide you with possible therapy options and clinical trials that you may be able to access based on the molecular profile of your tumour. This can aid your health care professional in creating the best treatment plan for you.

 
What is included in the Comprehensive  Tumour Analysis?

The Genomed Comprehensive Tumour Analysis may detect mutations in the DNA and fusions in the RNA across the following 500 genes.

The panel has been designed for translational and clinical research and analyses genes targeted by on-market oncology drugs and published evidence. Of the genes tested over 170 genes currently have targeted treatments, being used across 1,080 global clinic trials.

Let’s take this conversation offline.
If you’re interested to learn more of our genetic tests, we want to hear from you. For any inquiries, please email enquiries@genomedlabs.com

Hotspot & CNVs

Full-Coding DNA Sequence (CDS)

RNA Fusions

A1CF
ABCB1
ABL1
ABL2
ACVR1
AKT1
AKT2
AKT3
ALK
AR
ARAF
ATP1A1
AURKA
AURKB
AURKC
AXL
BCL2
BCL2L12
BCL6
BMP5
BRAF
BTK
CACNA1D
CARD11
CBL
CCND1
CCND2
CCND3
CCNE1
CD79B
CDK4
CDK6
CHD4
CSF1R
CSMD3
CTNNB1
CTNND2
CUL1
CYSLTR2
DDR1
DDR2
DGCR8
DROSHA
E2F1
EGFR
EIF1AX
EMSY
EPAS1
ERBB2
ERBB3
ERBB4
ESR1
EZH2
FAM135B
FGF19
FGF23
FGF3
FGF4
FGF7
FGF9
FGFR1
FGFR2
FGFR3
FGFR4

FLT3
FLT4
FOXA1
FOXL2
FOXO1
FYN
GATA2
GLI1
GLI3
GNA11
GNAQ
GNAS
H3F3A
H3F3B
HIF1A
HIST1H1E
HIST1H2BD
HIST1H3B
HRAS
IDH1
IDH2
IGF1R
IKBKB
IL6ST
IL7R
IRF4
IRS4
KCNJ5
KDR
KIR3DL1
KIT
KLF4
KLF5
KNSTRN
KRAS
MAGOH
MAP2K1
MAP2K2
MAPK1
MAX
MCL1
MDM2
MDM4
MECOM
MED12
MEF2B
MET
MITF
MPL
MTOR
MYC
MYCL
MYCN
MYD88
MYOD1
NFE2L2
NRAS
NSD2
NT5C2
NTRK1
NTRK2
NTRK3
NUP93
PAK5

PAX5
PCBP1
PDGFRA
PDGFRB
PIK3C2B
PIK3CA
PIK3CB
PIK3CD
PIK3CG
PIK3R2
PIM1
PLCG1
PPP2R1A
PPP6C
PRKACA
PTPN11
PTPRD
PXDNL
RAC1
RAF1
RARA
RET
RGS7
RHEB
RHOA
RICTOR
RIT1
ROS1
RPL10
RPS6KB1
RPTOR
SETBP1
SF3B1
SIX1
SIX2
SLCO1B3
SMC1A
SMO
SNCAIP
SOS1
SOX2
SPOP
SRC
SRSF2
STAT1
STAT3
STAT5B
STAT6
TAF1
TERT
TGFBR1
TOP1
TPMT
TRRAP
TSHR
U2AF1
USP8
WAS
XPO1
YAP1
YES1
ZNF217
ZNF429

ABRAXAS1
ACVR1B
ACVR2A
ADAMTS2
ADAMTS12
AMER1
APC
ARHGAP35
ARID1A
ARID1B
ARID2
ARID5B
ASXL1
ASXL2
ATM
ATR
ATRX
AXIN1
AXIN2
B2M
BAP1
BARD1
BCOR
BLM
BMPR2
BRCA1
BRCA2
BRIP1
CASP8
CBFB
CD274
CD276
CDC73
CDH1
CDH10
CDK12
CDKN1A
CDKN1B
CDKN2A
CDKN2B
CDKN2C
CHEK1
CHEK2
CIITA
CIC
CREBBP
CSMD3
CTCF
CTLA4
CUL3
CUL4A
CUL4B
CYLD
CYP2C9
CYP2D6
DAXX
DDX3X
DICER1
DNMT3A
DOCK3
DPYD
DSC1
DSC3
ELF3

ENO1
EP300
EPCAM
EPHA2
ERAP1
ERAP2
ERCC2
ERCC4
ERCC5
ERRFI1
ETV6
FANCA
FANCC
FANCD2
FANCE
FANCF
FANCG
FANCI
FANCL
FANCM
FAT1
FBXW7
FUBP1
GATA3
GNA13
GPS2
HDAC2
HDAC9
HLA-A
HLA-B
HNF1A
ID3
INPP4B
JAK1
JAK2
JAK3
KDM5C
KDM6A
KEAP1
KMT2A
KMT2B
KMT2C
KMT2D
LARP4B
LATS1
LATS2
MAP2K4
MAP2K7
MAP3K1
MAP3K4
MAPK8
MEN1
MGA
MLH1
MLH3
MRE11
MSH2
MSH3
MSH6
MTAP
MTUS2
MUTYH
NBN
NCOR1

NF1
NF2
NOTCH1
NOTCH2
NOTCH3
NOTCH4
PALB2
PARP1
PARP2
PARP3
PARP4
PBRM1
PDCD1
PDCD1LG2
PDIA3
PGD
PHF6
PIK3R1
PMS1
PMS2
POLD1
POLE
POT1
PPM1D
PPP2R2A
PRDM1
PRDM9
PRKAR1A
PSMB8
PSMB9
PSMB10
PTCH1
PTEN
PTPRT
RAD50
RAD51
RAD51B
RAD51C
RAD51D
RAD52
RAD54L
RASA1
RASA2
RB1
RBM10
RECQL4
RNASEH2A
RNASEH2B
RNASEH2C
RNF43
RPA1
RPL22
RPL5
RUNX1
RUNX1T1
SDHA
SDHB
SDHC
SDHD
SETD2
SLX4
SMAD2
SMAD4
SMARCA4

SMARCB1
SOCS1
SOX9
SPEN
STAG2
STK11
SUFU
TAP1
TAP2
TBX3
TCF7L2
TET2
TGFBR2
TMEM132DT
NFAIP3
TNFRSF14
TP53
TP63
TPP2
TSC1
TSC2
UGT1A1
USP9X
VHL
WT1
XRCC2
XRCC3
ZBTB20
ZFHX3
ZMYM3

AKT2
ALK
AR
AXL
BRAF
BRCA1
BRCA2
CDKN2A
EGFR
ERB84
ERBB2
ERG
ESR1
ETV1
ETV4
ETV5
FGFR1
FGFR2
FGFR3
FGR
FLT3
JAK2
KRAS
MDM4
MET
MYB
MYBL1
NF1
NOTCH1
NOTCH4
NRG1

The Genomed Comprehensive  Tumour Analysis can also give an indication of tumour mutational burden (TMB), homologous recombination deficiency (HRD) and  Microsatellite Instability (MSI), all of which are important emerging biomarkers in predicting your likely response to immune checkpoint inhibitors.

Technical Information:

Testing targets specific gene mutations and does not detect mutations that are outside of the targeted area. Testing does not completely sequence every exon of each one of the cancer genes. For Ion Torrent sequencing, the limit of detection is 5% at 500X coverage and 10% at 200X coverage. The limit of detection for sequencing is ~1%. For medical practitioners seeking further technical information regarding the assay, please contact Genomics For Life. 

What sample do you need to perform the Comprehensive Tumour Analysis?

To perform this test we require tissue that has been excised from your most recent biopsy. Previous biopsies can also be used in most cases* and a new biopsy is not usually required. This assay uses the Ion AmpliSeqTM technology and has been optimised to enable detection of variants using low-input FFPE samples such as fine needle biopsies and core needle aspirates.

*Please contact Genomed if your most recent biopsy was more than one year ago or if no biopsy is available, to discuss testing options

How can I use the results of the Comprehensive Tumour Analysis?

The aim of this test is to provide information for your health care professional to help tailor treatment to your specific needs, as well as identify potential access to clinical trials. Your personalised report will provide you with the genetic characteristics of your tumour which can then be matched with specific drugs that may help to increase the likelihood of disease-free progression.

A comprehensive genomic analysis may provide information on:

  • Potential therapeutics
  • Potential therapeutic resistance
  • Clinical Trials and New Treatments
  • Prognosis

Genomic testing provides a personalised approach to your cancer treatment, giving you the best chance of survival. Clinical trials of over 70,000 patients have shown that personalized therapy, based on genomic profiling of tumours, is the most effective way to improve treatment outcomes, with higher response rates, longer progression free and overall survival, and fewer deaths related to toxic effects across cancers.

Investing in genomic testing, to obtain a complete diagnosis and to select appropriate, targeted therapy, is a small cost compared with the time and money that may be wasted on ill-chosen therapies. Genomic testing provides a powerful diagnostic tool, and every patient with cancer deserves an accurate diagnosis.

Why is it important to have genomic testing on my tumour?

Mutational analysis is important to clinical decision-making in cases of tumours as an aid for therapy treatment decisions. Tumour molecular profiling is a fundamental component of precision oncology, enabling the identification of genomic alterations in genes and pathways that can be targeted therapeutically.

In 2018, genome-informed treatment could be offered to 15.44% of patients with metastatic cancer.  The percentage of patients with cancer estimated to benefit from genome-targeted therapy in 2006 was 0.70%, and in 2018, it has increased to 4.90%.  For genome-informed treatment in 2006, the percentage estimated to benefit was 1.31%, and in 2018, it has increased to 6.62%.  The median overall response rate for all genome-informed drugs through January 2018 was 54%, and the median duration of response was 29.5 months.  A retrospective analysis of 1,307 patients with at least 1 genetic change in the cancer, showed improved outcomes for patients whose treatments were matched to their genomic profile.

Ready to take control of your treatment plan?

Genomed aims to educate patients and their families on their cancer types and empower them with the knowledge to take control of their treatment plans. As each patient’s case is unique, there is no “one size fits all” when it comes to testing. We encourage you to contact Genomed, and we can work with you and your oncologist/specialist, to determine what tests would benefit you.